Thursday, September 26, 2013

Dear Marc Henri,

Please forward this message to J-L Nottéghem-

We all agree that widely used names should not be changed before careful evaluation and thorough discussion, and that is why we are here discussing this issue in the past several months. 

The reason that Magnaporthe is not the right generic name for the rice blast fungus is not because of the new nomenclature, but because recent analysis based on DNA sequences, morphological, and ecological characters all  indicate that the rice blast fungus is different from the true Magnaporthe--the rice stem rot fungus (M. salvinii).  Unless we conserve Magnaporthe for the rice blast fungus, a name change is needed.

Regarding the change of fungal nomenclature-



There are over one million catalogued species on earth, among which 70,000 are fungi, with many more yet to be discovered or described.  Due to the lack of molecular genetic  tools to make connection between asexual and sexual forms, fungi were allowed to be given more than one names (dual nomenclature).  Now PCR and sequencing enable us to link all forms of a species.  Although the transition is difficult, for the stability in longer term, One Fungus = One Name was adopted in Melbourne Code and there is no way back. Moving to one scientific name for each species of fungus aligns the fungi with the other groups of organisms governed by codes of nomenclature including the International Code of Zoological Nomenclature and the International Code of Nomenclature of Bacteria. For no other group of organisms has two scientific names for one species been allowed except for the fossils and with the Melbourne Code that changed as well.

Regards,

Ning

Ning Zhang, Ph.D
Assistant Professor
Dept. of Plant Biology and Pathology
Dept. of Biochemistry and Microbiology
Rutgers, The State University of New Jersey
59 Dudley Road, Foran Hall 201
New Brunswick, NJ  08901

phone: (848)932-6348
zhang@aesop.rutgers.edu
http://aesop.rutgers.edu/~plantbiopath/faculty/zhang/zhang.htm
http://dbm.rutgers.edu/profile.php?PID=16

On Sep 25, 2013, at 3:53 AM, mh lebrun <marc-henri.lebrun@versailles.inra.fr> wrote:

Dear Marc Henri, I heard about changing /Magnaporthe oryzae/ name. Can you  please forward my comments to the community discussing about coming back to "/Pyricularia/". Sincerely yours J-L Nottéghem.

"Taxonomists are a group of scientists rarely understood by the rest of the scientific community but their decisions have consequences for a much larger community. Names changes have consequences for many people who does not understand the reasons for changing names too often. For many people the rules are not clear and change too often...

When a species name changes, the question is when will be the next change, is it useful to use the new name???In the case of rice blast,  it was first named //Pyricularia oryzae//, then it has ben changed and adopted for more than 25 years as /Magnaporthe oryzae/,  by pathologists but also by agronomists, breeders and a large communauty of people working  on  either Magnaporthe, or rice or both. Everybody understood that there are different names for anamorph and telomorph, and this difference makes sens, supressing this rule will be disturbing for many people... Going back to the very old story of //Pyricularia //have no interest excepte for pure taxonomists who does not consider the trouble they made to non taxonomists....

Sincerely supporting conserving Magnaporthe for the sake of the rice blast community from the point of view of a long standing researcher both in the field and the lab (50 years)

Nottéghem J.L."

Jean Loup notteghem <notteghe@supagro.inra.fr>
professeur émérite
Montpellier SupAgro

3 comments:

  1. Dear All,

    The on-going discussion has clearly shown that the only reason for retaining Magnaporthe is that the name is in more use in the recent years. It is obvious that the use of Magnaporthe is higher in the recent years because Magnaporthe oryzae was adopted as valid name in 2002. Now the new findings have clearly shown that Magnaporthe is not the correct name for the rice blast fungus. If we want to continue the name just for the reason that it has been in more use in recent years what is the use of new findings? And why we should do new researches?

    In one of the e-mails, Dr. Jin-Rong Xu gave the results of his survey on the use of Pyricularia and Magnaporthe. The results as he posted are as follows:

    1993-2013 2003-2013 2008-2013 2012-2013
    Magnaporthe: 1119 783 485 145
    Pyricularia : 309 134 58 17
    He found 145 journal articles with Magnaporthe and only 17 with Pyricularia during 2012 and 2013. I also did a quick survey on the journal articles published during 2012 and 2013. I found dozens of articles (against the number 17 Dr. Xu found) published with Pyricularia during the period. I have listed below some of the articles published in 2013 only. In 10 articles, the name is used in the title itself. In others, the name was used in the body, the part of which is shown in the square bracket. (I also found several articles using Pyricularia oryzae (I am not talking about P. grisea) on crops/plants other than rice). The articles listed below also shows that the name is not only used by core rice blast researchers, but also by diverse research groups.

    Therefore, I urge the scientific community to settle this issue as soon as possible. Longer we wait more we complicate the matter. Rice blast fungus is our concern and rice blast fungus is our model, not the name Magnaporthe or Pyricularia. Our ancestors (at least for last six generations) and we know the fungus genus by Pyricularia (since 1880). So, why should we prefer Magnaporthe, which came into existence only in 1972 and which has now been proved different from what we used to thought earlier.

    With best regards.

    Hira Kaji Manandhar

    ReplyDelete
  2. 1. Plant Pathology 2013. Article first published online: 6 AUG 2013. The effect of silicon on antioxidant metabolism of wheat leaves infected by Pyricularia oryzae.
    2. Asian Journal of Plant Science and Research, 2013, 3(1): 108-110. ISSN : 2249- .Prevalence and distribution of blast disease (Pyricularia oryzae cav.) on rice.

    3. Emirates Journal of Food and Agriculture, Vol 25, No 5 (2013): 349-357. Management of rice blast disease (Pyricularia oryzae) using formulated bacterial consortium.
    4. Phytopathology. 2013 Jul 31. [Epub ahead of print]. Limitations to photosynthesis in leaves of wheat plants infected by Pyricularia oryzae.

    5. Asian Journal of Plant Science and Research, 2013, 3(1): 108-110 Prevalence and distribution of blast disease (Pyricularia oryzae cav.) on rice plants in paddy growing areas of the Bundi district, Rajasthan.

    6. Chinese Journal of Rice Science, 2013.The Perfect Stage of Pyricularia oryzae Cav. from rice and non-rice Isolate in culture media.

    7. African Journal of Microbiology Research Vol. 7(26), pp. 3379-3388, 25 June, 2013. Variability in Pyricularia oryzae from different rice growing regions of Tamil Nadu, India.

    8. International Journal of Agriculture and Crop Sciences. Available online at www.ijagcs.com. IJACS/2013/5-4/390-394. ISSN 2227-670X ©2013 IJACS Journal. A Field Evaluation of Resistance to Pyricularia oryzae in Rice Genotypes.

    9. International Journal of Pharm Bio Science. 2013 Apr; 4(2): (b) 831 – 838. Development and use of different formulations of Pseudomonas fluorescens siderophore for the enhancement of plant growth and induction of systemic resistance against Pyricularia oryzae in lowland rice.

    10. Applied and Environmental Microbiology, Dec. 1995, p. 4374–4377 Vol. 61, No. 12. Phenolic Azo Dye Oxidation by Laccase from Pyricularia oryzae.

    11. Journal of Agricultural Science; Vol. 5, No. 1; 2013.Effects of cultivar, planting period, and fungicide usage on rice blast infection levels and crop yield. [Studies were separately conducted to determine the effects of cultivar, planting date, and fungicide usage on rice blast disease, caused by Pyricularia grisea (Cooke) Sacc. [= Magnaporthe grisea (Hebert) Barr] in Kecamatan, Manggala, South Sulawesi Indonesia.]

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  3. 12. International Journal of Agriculture: Research and Review. Vol., 3 (4), 934-940, 2013. Evaluation of rice genotypes for resistance to blast isolates Iran-47 in greenhouse. [ … this study was conducted to evaluate and measure the resistance components using race-specific (Iran-47 strain) Pyricularia grisea in a greenhouse.]

    13. Discovery Biotechnology 2013, 4(10), 12-17. Fungicidal compounds from a marine Ascidian-associated fungus Trichoderma harzianum. [Fractionation of the cell-free culture filtrate of T. harzianum (NIO/BCC2000-51) showed its ethyl acetate (EA) fraction to be significantly active against fungal phytopathogens; Macrophomina sp, Pyricularia oryzae, Sclerotium rolfsii, Penicillium piceum, Trichoderma koningii, T. longibrachiatum and a food-infesting fungal pathogen Penicillium griseofulvum.]

    14. Life Science Journal 2013; 10(3). Vegetative compatibility and strain improvement of some Egyptian Trichoderma isolates. [Thirteen Trichoderma isolates listed in Table (1) and four phytopathogens namely Sclerotium rolfsii Sacc., Rhizoctonia solani Kühn, Fusarium oxysporum Schlect. f. sp. lycopersici Sacc. and Pyricularia oryzae Cav. were used in the present study.]

    15. International Journal of Research in Pure and Applied Microbiology 2013; 3(1): 25-29. Survey of seed-borne fungi associated with rice seeds in India. [Totally sixteen genera of fungi viz., Acremonium, Alternaria, Aspergillus, Bipolaris, Chaetomium, Cladosporium, Curvularia, Exserohilum, Fusarium, Microdochium, Nigrospora, Phoma, Pyricularia, Rhizoctonia, Rhizopus and Verticillium comprising 27 species were found to be associated with the rice seed samples.]

    16. Journal of Applicable Chemistry, 2013, 2 (4): 717-721. Synthesis and fungicidal activities of some 2- aryl-5-[phthalimido substituted methyl] 2, 5-bis [phthalimido substituted methyl]-1,3,4-oxadiazoles. [Several 2-aryl-5-[phthalimido substituted methyl]-1,3,4-oxadiazoles have been synthesised by the stirring of 2-[phthalimido] alkanoyl aryl hydrazone with bromine in presence of fused sodium acetate and 2,5-bis [phthalimido substituted methyl]-1,3,4-oxadiazoles have been synthesised by the cyclisasation of 1,2-bis [phthalimido] alkanoyl hydrazine with conc. H2S04 with constant stirring in cold and screened for their anti fungal activities against Pyricularia oryzae, Pseudoperonospora cubensis, Sphaerotheca fuliginea and Phytophthora infestans.]

    17. 17. Asian J. Exp. Biol. Sci. Vol 4(3) 2013: 508-510. A Seasonal Concentration of Different Spore Types Over Paddy Fields. ( L.) with Special Reference to Kharif Season.
    18. 18. Pharmacology & Pharmacy, 2013, 4, 110-114. Antimicrobial Activity of Eucosterol Oligosaccharides Isolated from Bulb of Squill (Scilla scilloides). [Methanol (MeOH) extract and purified compounds, EOs showed a selective inhibitory activity against eukaryotic cells including fungal species such as Aspergillus flavus, Candida albicans, Pyricularia oryzae and an alga such as Chlorella regulsris at the concentration of 200 μg/paper disc, but little active against bacteria.]
    19. 19. Chinese Science Bulletin, 2013, 58: 2282-2289. Bioactivity and constituents of several common seaweeds. [In the anti-Pyricularia oryzae test, Sym. latiuscula and Rh. confervoides strongly inhibited the germination of the spores of P. oryzae on agar plate.]

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